Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMO61288.1Hypothetical protein. (235 aa)    
Predicted Functional Partners:
AMO61821.1
Putative metallo-hydrolase.
     
  0.900
AMO63524.1
Hypothetical protein.
 
     0.667
AMO60102.1
Cutinase.
  
     0.661
AMO60112.1
Glyoxalase-like domain protein.
 
     0.628
AMO61287.1
Type I phosphodiesterase / nucleotide pyrophosphatase.
  
    0.589
AMO59958.1
Hypothetical protein.
  
     0.568
AMO61289.1
Hypothetical protein.
       0.551
AMO61107.1
Acyltransferase family protein.
  
  
 0.492
AMO63050.1
Hypothetical protein.
  
    0.489
hadL
(S)-2-haloacid dehalogenase.
 
    0.485
Your Current Organism:
Mycolicibacterium phlei
NCBI taxonomy Id: 1771
Other names: ATCC 11758, Bacterium phlei, CCUG 21000, CIP 105389, DSM 43239, JCM 5865, JCM 6385, M. phlei, Mycobacterium phlei, NCTC 8151, NRRL B-14615, Sclerothrix phlei
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