STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ripA_1Peptidoglycan endopeptidase RipA precursor. (180 aa)    
Predicted Functional Partners:
ripA_2
Peptidoglycan endopeptidase RipA precursor.
 
  
0.746
AMO62877.1
Hypothetical protein.
  
  
 0.633
AMO62878.1
Hypothetical protein.
  
  
 0.595
AMO62484.1
Hypothetical protein.
  
  
 0.588
AMO60091.1
PaaX-like protein C-terminal domain.
      
 0.583
rpfB
Resuscitation-promoting factor RpfB precursor.
  
  
 0.570
lhgO_1
L-2-hydroxyglutarate oxidase LhgO.
       0.531
ctaC
Cytochrome c oxidase subunit 2 precursor.
      
 0.530
AMO62125.1
Putative endopeptidase precursor.
  
  
0.529
AMO60340.1
Putative endopeptidase precursor.
  
  
0.513
Your Current Organism:
Mycolicibacterium phlei
NCBI taxonomy Id: 1771
Other names: ATCC 11758, Bacterium phlei, CCUG 21000, CIP 105389, DSM 43239, JCM 5865, JCM 6385, M. phlei, Mycobacterium phlei, NCTC 8151, NRRL B-14615, Sclerothrix phlei
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.