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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMO61359.1Helix-turn-helix protein. (295 aa)    
Predicted Functional Partners:
yhdN_1
General stress protein 69.
       0.558
alkJ_1
Alcohol dehydrogenase (acceptor).
       0.478
rslA_2
Anti-sigma-L factor RslA.
 
  
 0.468
AMO60890.1
Helix-turn-helix protein.
  
     0.441
AMO63506.1
Hypothetical protein; Mycothiol maleylpyruvate isomerase N-terminal domain.
  
 
 0.428
AMO61331.1
Zeta toxin.
  
 
 0.407
AMO62074.1
Bacterial regulatory protein, tetR family.
  
     0.407
Your Current Organism:
Mycolicibacterium phlei
NCBI taxonomy Id: 1771
Other names: ATCC 11758, Bacterium phlei, CCUG 21000, CIP 105389, DSM 43239, JCM 5865, JCM 6385, M. phlei, Mycobacterium phlei, NCTC 8151, NRRL B-14615, Sclerothrix phlei
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