STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMO61854.1Putative transmembrane protein (PGPGW). (139 aa)    
Predicted Functional Partners:
AMO61855.1
Thioesterase superfamily protein.
       0.824
thrS
Threonine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family.
     
 0.717
ydbC_2
Putative oxidoreductase YdbC.
  
    0.717
pgsA_2
CDP-diacylglycerol--inositol 3-phosphatidyltransferase.
  
    0.689
AMO61852.1
AP-4-A phosphorylase.
  
    0.688
pimA_4
GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase.
  
    0.682
AMO61850.1
Phosphatidylinositol mannoside acyltransferase.
       0.677
rppH_2
RNA pyrophosphohydrolase.
       0.636
AMO61848.1
Hypothetical protein.
       0.636
AMO61857.1
Hypothetical protein.
 
     0.608
Your Current Organism:
Mycolicibacterium phlei
NCBI taxonomy Id: 1771
Other names: ATCC 11758, Bacterium phlei, CCUG 21000, CIP 105389, DSM 43239, JCM 5865, JCM 6385, M. phlei, Mycobacterium phlei, NCTC 8151, NRRL B-14615, Sclerothrix phlei
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