STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptpA_1Putative low molecular weight protein-tyrosine-phosphatase. (164 aa)    
Predicted Functional Partners:
AMO58917.1
Hypothetical protein.
    
 0.951
AMO62179.1
5'-nucleotidase.
  
  
 0.909
AMO58954.1
Fructosamine kinase.
   
 0.834
blh
Beta-lactamase hydrolase-like protein.
  
 
 0.815
AMO62181.1
SURF1 family protein.
       0.805
AMO62177.1
Putative GTP cyclohydrolase 1 type 2.
  
  
 0.772
AMO62176.1
Putative zinc ribbon domain protein.
  
    0.680
tmoS
Sensor histidine kinase TmoS.
  
  
 0.664
pspA_6
Phosphoserine phosphatase 1.
  
  
 0.663
cobD
Threonine-phosphate decarboxylase.
       0.663
Your Current Organism:
Mycolicibacterium phlei
NCBI taxonomy Id: 1771
Other names: ATCC 11758, Bacterium phlei, CCUG 21000, CIP 105389, DSM 43239, JCM 5865, JCM 6385, M. phlei, Mycobacterium phlei, NCTC 8151, NRRL B-14615, Sclerothrix phlei
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