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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gltC_2HTH-type transcriptional regulator GltC. (295 aa)    
Predicted Functional Partners:
oxyR_2
Hydrogen peroxide-inducible genes activator.
  
     0.769
oxyR_3
Putative hydrogen peroxide-inducible genes activator.
  
   
 0.704
fabG_11
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
 
   
 0.702
accA1_2
Acetyl-/propionyl-coenzyme A carboxylase alpha chain.
  
  
 0.555
AMO60415.1
Hypothetical protein.
      
 0.532
AMO63040.1
Hypothetical protein.
  
     0.528
chbR
HTH-type transcriptional regulator ChbR.
  
  
 0.518
srrA
Transcriptional regulatory protein SrrA.
  
 
 0.482
dmlR_2
HTH-type transcriptional regulator DmlR.
  
     0.419
ideR_2
Iron-dependent repressor IdeR.
  
 
 0.416
Your Current Organism:
Mycolicibacterium phlei
NCBI taxonomy Id: 1771
Other names: ATCC 11758, Bacterium phlei, CCUG 21000, CIP 105389, DSM 43239, JCM 5865, JCM 6385, M. phlei, Mycobacterium phlei, NCTC 8151, NRRL B-14615, Sclerothrix phlei
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