Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
arlSSignal transduction histidine-protein kinase ArlS. (391 aa)    
Predicted Functional Partners:
qseB
Transcriptional regulatory protein QseB.
 
 
 0.980
prrA_2
Transcriptional regulatory protein PrrA.
 
 
 0.883
prrA_1
Transcriptional regulatory protein PrrA.
 
 
 0.882
mtrA
DNA-binding response regulator MtrA.
 
 
 0.882
mprA
Response regulator MprA.
 
 
 0.881
tcrX_1
Putative transcriptional regulatory protein TcrX.
 
 
 0.877
tcrX_2
Putative transcriptional regulatory protein TcrX.
 
 
 0.877
regX3
Sensory transduction protein regX3.
 
 
 0.875
tcrX_3
Putative transcriptional regulatory protein TcrX.
 
 
 0.868
kgd
Multifunctional 2-oxoglutarate metabolism enzyme.
  
 0.796
Your Current Organism:
Mycolicibacterium phlei
NCBI taxonomy Id: 1771
Other names: ATCC 11758, Bacterium phlei, CCUG 21000, CIP 105389, DSM 43239, JCM 5865, JCM 6385, M. phlei, Mycobacterium phlei, NCTC 8151, NRRL B-14615, Sclerothrix phlei
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