Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMO62280.1Hypothetical protein. (434 aa)    
Predicted Functional Partners:
AMO62279.1
MbtH-like protein.
  
  
 0.984
eryA_2
Erythronolide synthase, modules 1 and 2.
  
  
 0.972
eryA_1
Erythronolide synthase, modules 5 and 6.
 
 
 0.967
mbtB_2
Phenyloxazoline synthase MbtB.
 
 
 0.943
mbtB_1
Phenyloxazoline synthase MbtB.
 
  
 0.935
ppsA_1
Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsA.
 
 
 0.894
dhbF_2
Dimodular nonribosomal peptide synthase.
  
 
 0.880
lgrD_2
Linear gramicidin synthase subunit D.
  
 
 0.880
lgrD_1
Linear gramicidin synthase subunit D.
  
 
 0.858
mbtK
Lysine N-acyltransferase MbtK.
 
  
 0.845
Your Current Organism:
Mycolicibacterium phlei
NCBI taxonomy Id: 1771
Other names: ATCC 11758, Bacterium phlei, CCUG 21000, CIP 105389, DSM 43239, JCM 5865, JCM 6385, M. phlei, Mycobacterium phlei, NCTC 8151, NRRL B-14615, Sclerothrix phlei
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