Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
irtA_1Iron import ATP-binding/permease protein IrtA. (444 aa)    
Predicted Functional Partners:
irtB
Iron import ATP-binding/permease protein IrtB.
 
  
0.982
AMO62289.1
Hypothetical protein.
     0.947
irtA_2
Iron import ATP-binding/permease protein IrtA.
 
 
 0.902
dnaK_3
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.752
dnaK_1
Chaperone protein DnaK.
 
 0.718
eryA_1
Erythronolide synthase, modules 5 and 6.
  
 0.671
mbtB_2
Phenyloxazoline synthase MbtB.
 
  
 0.663
mbtB_1
Phenyloxazoline synthase MbtB.
 
  
 0.648
eryA_2
Erythronolide synthase, modules 1 and 2.
 
 
 0.640
ftsH2_2
ATP-dependent zinc metalloprotease FtsH 2; Belongs to the AAA ATPase family.
 
 
 0.640
Your Current Organism:
Mycolicibacterium phlei
NCBI taxonomy Id: 1771
Other names: ATCC 11758, Bacterium phlei, CCUG 21000, CIP 105389, DSM 43239, JCM 5865, JCM 6385, M. phlei, Mycobacterium phlei, NCTC 8151, NRRL B-14615, Sclerothrix phlei
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