STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
liaR_3Transcriptional regulatory protein LiaR. (78 aa)    
Predicted Functional Partners:
tmoS
Sensor histidine kinase TmoS.
  
 
 0.833
comP
Sensor histidine kinase ComP.
 
 
 0.830
AMO62295.1
Hypothetical protein.
 
     0.812
degS
Signal transduction histidine-protein kinase/phosphatase DegS.
 
 
 0.797
nreB_1
Oxygen sensor histidine kinase NreB.
 
 
 0.768
devS
Redox sensor histidine kinase response regulator DevS.
 
 
 0.758
nreB_2
Oxygen sensor histidine kinase NreB.
 
 
 0.750
liaR_2
Transcriptional regulatory protein LiaR.
 
     0.739
liaS
Sensor histidine kinase LiaS.
 
 
 0.725
degU_1
Transcriptional regulatory protein DegU.
 
     0.690
Your Current Organism:
Mycolicibacterium phlei
NCBI taxonomy Id: 1771
Other names: ATCC 11758, Bacterium phlei, CCUG 21000, CIP 105389, DSM 43239, JCM 5865, JCM 6385, M. phlei, Mycobacterium phlei, NCTC 8151, NRRL B-14615, Sclerothrix phlei
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.