Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AMO61966.1 | cca | MPHLCCUG_03161 | MPHLCCUG_05198 | Putative ribonuclease J. | CCA-adding enzyme; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.516 |
AMO61966.1 | orn | MPHLCCUG_03161 | MPHLCCUG_03676 | Putative ribonuclease J. | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides. | 0.617 |
AMO61966.1 | pnp | MPHLCCUG_03161 | MPHLCCUG_03179 | Putative ribonuclease J. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.853 |
AMO61966.1 | rng | MPHLCCUG_03161 | MPHLCCUG_03595 | Putative ribonuclease J. | Ribonuclease G. | 0.816 |
AMO61966.1 | rph | MPHLCCUG_03161 | MPHLCCUG_03878 | Putative ribonuclease J. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.500 |
AMO62473.1 | orn | MPHLCCUG_03675 | MPHLCCUG_03676 | AAA-like domain protein. | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides. | 0.652 |
cca | AMO61966.1 | MPHLCCUG_05198 | MPHLCCUG_03161 | CCA-adding enzyme; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Putative ribonuclease J. | 0.516 |
cca | hrpB | MPHLCCUG_05198 | MPHLCCUG_04990 | CCA-adding enzyme; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | ATP-dependent RNA helicase HrpB. | 0.416 |
cca | orn | MPHLCCUG_05198 | MPHLCCUG_03676 | CCA-adding enzyme; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides. | 0.757 |
cca | pnp | MPHLCCUG_05198 | MPHLCCUG_03179 | CCA-adding enzyme; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.799 |
cca | rng | MPHLCCUG_05198 | MPHLCCUG_03595 | CCA-adding enzyme; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Ribonuclease G. | 0.515 |
cca | rph | MPHLCCUG_05198 | MPHLCCUG_03878 | CCA-adding enzyme; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.749 |
cysQ_1 | nrnA | MPHLCCUG_03254 | MPHLCCUG_03198 | 3'-phosphoadenosine 5'-phosphate phosphatase. | Bifunctional oligoribonuclease and PAP phosphatase NrnA. | 0.925 |
cysQ_1 | orn | MPHLCCUG_03254 | MPHLCCUG_03676 | 3'-phosphoadenosine 5'-phosphate phosphatase. | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides. | 0.583 |
hrpB | cca | MPHLCCUG_04990 | MPHLCCUG_05198 | ATP-dependent RNA helicase HrpB. | CCA-adding enzyme; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.416 |
hrpB | orn | MPHLCCUG_04990 | MPHLCCUG_03676 | ATP-dependent RNA helicase HrpB. | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides. | 0.636 |
hrpB | pnp | MPHLCCUG_04990 | MPHLCCUG_03179 | ATP-dependent RNA helicase HrpB. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.504 |
hrpB | rph | MPHLCCUG_04990 | MPHLCCUG_03878 | ATP-dependent RNA helicase HrpB. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.868 |
infC | orn | MPHLCCUG_02231 | MPHLCCUG_03676 | Translation initiation factor IF-3; Belongs to the IF-3 family. | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides. | 0.535 |
infC | pnp | MPHLCCUG_02231 | MPHLCCUG_03179 | Translation initiation factor IF-3; Belongs to the IF-3 family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.567 |
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