STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potB_3Spermidine/putrescine transport system permease protein PotB. (300 aa)    
Predicted Functional Partners:
ydcV_2
Inner membrane ABC transporter permease protein YdcV.
 
 0.997
potF_1
Putrescine-binding periplasmic protein precursor.
 
 
 0.993
ydcV_1
Inner membrane ABC transporter permease protein YdcV.
 
 0.992
potA_2
Spermidine/putrescine import ATP-binding protein PotA.
 
 0.992
potF_2
Putrescine-binding periplasmic protein precursor.
 
 
 0.991
potD
Spermidine/putrescine-binding periplasmic protein precursor.
 
 
 0.989
potA_1
Spermidine/putrescine import ATP-binding protein PotA.
 
 0.989
potB_2
Spermidine/putrescine transport system permease protein PotB.
  
  
 
0.924
fbpC2
Fe(3+) ions import ATP-binding protein FbpC 2.
 
 0.910
cysA_3
Sulfate/thiosulfate import ATP-binding protein CysA.
 
 0.910
Your Current Organism:
Mycolicibacterium phlei
NCBI taxonomy Id: 1771
Other names: ATCC 11758, Bacterium phlei, CCUG 21000, CIP 105389, DSM 43239, JCM 5865, JCM 6385, M. phlei, Mycobacterium phlei, NCTC 8151, NRRL B-14615, Sclerothrix phlei
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.