STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMO62816.1Hypothetical protein. (170 aa)    
Predicted Functional Partners:
AMO62808.1
Substrate binding domain of ABC-type glycine betaine transport system.
 
    0.846
poxB
Pyruvate dehydrogenase (ubiquinone).
  
  
 0.770
osmF
Putative osmoprotectant uptake system substrate-binding protein OsmF precursor.
  
    0.728
sugC
Trehalose import ATP-binding protein SugC.
       0.703
sugA_4
Trehalose transport system permease protein SugA.
       0.703
lpqY
Trehalose-binding lipoprotein LpqY precursor.
       0.703
AMO62811.1
Suppressor of fused protein (SUFU).
       0.580
AMO59613.1
Hypothetical protein.
 
    0.578
AMO62817.1
Hypothetical protein.
       0.559
AMO62818.1
Hypothetical protein.
       0.559
Your Current Organism:
Mycolicibacterium phlei
NCBI taxonomy Id: 1771
Other names: ATCC 11758, Bacterium phlei, CCUG 21000, CIP 105389, DSM 43239, JCM 5865, JCM 6385, M. phlei, Mycobacterium phlei, NCTC 8151, NRRL B-14615, Sclerothrix phlei
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