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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
caiD_3Carnitinyl-CoA dehydratase. (265 aa)    
Predicted Functional Partners:
fadB2
3-hydroxybutyryl-CoA dehydrogenase.
 0.950
fadA_6
3-ketoacyl-CoA thiolase.
  
 0.935
mmgC_14
Acyl-CoA dehydrogenase.
  
 0.902
mmgB
Putative 3-hydroxybutyryl-CoA dehydrogenase.
 0.795
AMO61204.1
acetyl-CoA acetyltransferase.
 
 0.783
kasA_1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
  
 0.735
AMO59425.1
Lipid-transfer protein.
  
 0.726
fadA_4
3-ketoacyl-CoA thiolase.
  
 0.725
fadA_5
3-ketoacyl-CoA thiolase.
  
 0.725
pcaF_1
Beta-ketoadipyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.724
Your Current Organism:
Mycolicibacterium phlei
NCBI taxonomy Id: 1771
Other names: ATCC 11758, Bacterium phlei, CCUG 21000, CIP 105389, DSM 43239, JCM 5865, JCM 6385, M. phlei, Mycobacterium phlei, NCTC 8151, NRRL B-14615, Sclerothrix phlei
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