STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tpa_2Taurine--pyruvate aminotransferase. (464 aa)    
Predicted Functional Partners:
mmsA_2
Methylmalonate-semialdehyde dehydrogenase (acylating).
 
 
 0.980
dat
Diaminobutyrate--2-oxoglutarate aminotransferase.
 
 
0.933
puuE_1
4-aminobutyrate aminotransferase PuuE.
 
 
0.930
mmsA_1
Methylmalonate-semialdehyde dehydrogenase (acylating).
 
 
 0.921
panC
Pantothenate synthetase.
  
 
 0.915
panD
Aspartate 1-decarboxylase precursor; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
    
 0.910
calB_1
Coniferyl aldehyde dehydrogenase.
  
 
 0.909
ald_1
3-succinoylsemialdehyde-pyridine dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.909
ald_2
3-succinoylsemialdehyde-pyridine dehydrogenase.
  
 
 0.909
geoB_1
Geranial dehydrogenase.
  
 
 0.909
Your Current Organism:
Mycolicibacterium phlei
NCBI taxonomy Id: 1771
Other names: ATCC 11758, Bacterium phlei, CCUG 21000, CIP 105389, DSM 43239, JCM 5865, JCM 6385, M. phlei, Mycobacterium phlei, NCTC 8151, NRRL B-14615, Sclerothrix phlei
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