STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oxyR_3Putative hydrogen peroxide-inducible genes activator. (316 aa)    
Predicted Functional Partners:
ahpC
Alkyl hydroperoxide reductase subunit C.
     
 0.829
ahpF
Alkyl hydroperoxide reductase subunit F.
     
 0.707
gltC_2
HTH-type transcriptional regulator GltC.
  
   
 0.704
benM
HTH-type transcriptional regulator BenM.
  
     0.696
ykoC
Putative HMP/thiamine permease protein YkoC.
  
 
 0.554
ykoD
Putative HMP/thiamine import ATP-binding protein YkoD.
       0.511
ykoE
Putative HMP/thiamine permease protein YkoE.
       0.505
AMO61225.1
Hypothetical protein.
       0.472
srrA
Transcriptional regulatory protein SrrA.
  
 
 0.441
ideR_2
Iron-dependent repressor IdeR.
  
 
 0.417
Your Current Organism:
Mycolicibacterium phlei
NCBI taxonomy Id: 1771
Other names: ATCC 11758, Bacterium phlei, CCUG 21000, CIP 105389, DSM 43239, JCM 5865, JCM 6385, M. phlei, Mycobacterium phlei, NCTC 8151, NRRL B-14615, Sclerothrix phlei
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