Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AMO63773.1 | AMO63774.1 | MPHLCCUG_04988 | MPHLCCUG_04989 | Putative pyridoxine/pyridoxamine 5'-phosphate oxidase. | Glutamine cyclotransferase. | 0.658 |
AMO63773.1 | AMO63776.1 | MPHLCCUG_04988 | MPHLCCUG_04991 | Putative pyridoxine/pyridoxamine 5'-phosphate oxidase. | Helix-turn-helix protein. | 0.577 |
AMO63773.1 | hrpB | MPHLCCUG_04988 | MPHLCCUG_04990 | Putative pyridoxine/pyridoxamine 5'-phosphate oxidase. | ATP-dependent RNA helicase HrpB. | 0.620 |
AMO63774.1 | AMO63773.1 | MPHLCCUG_04989 | MPHLCCUG_04988 | Glutamine cyclotransferase. | Putative pyridoxine/pyridoxamine 5'-phosphate oxidase. | 0.658 |
AMO63774.1 | AMO63776.1 | MPHLCCUG_04989 | MPHLCCUG_04991 | Glutamine cyclotransferase. | Helix-turn-helix protein. | 0.668 |
AMO63774.1 | acr1_7 | MPHLCCUG_04989 | MPHLCCUG_04992 | Glutamine cyclotransferase. | Fatty acyl-CoA reductase. | 0.447 |
AMO63774.1 | cshA | MPHLCCUG_04989 | MPHLCCUG_01689 | Glutamine cyclotransferase. | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | 0.520 |
AMO63774.1 | deaD | MPHLCCUG_04989 | MPHLCCUG_04009 | Glutamine cyclotransferase. | ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.520 |
AMO63774.1 | hrpB | MPHLCCUG_04989 | MPHLCCUG_04990 | Glutamine cyclotransferase. | ATP-dependent RNA helicase HrpB. | 0.751 |
AMO63774.1 | rhlE_2 | MPHLCCUG_04989 | MPHLCCUG_01406 | Glutamine cyclotransferase. | ATP-dependent RNA helicase RhlE. | 0.520 |
AMO63776.1 | AMO63773.1 | MPHLCCUG_04991 | MPHLCCUG_04988 | Helix-turn-helix protein. | Putative pyridoxine/pyridoxamine 5'-phosphate oxidase. | 0.577 |
AMO63776.1 | AMO63774.1 | MPHLCCUG_04991 | MPHLCCUG_04989 | Helix-turn-helix protein. | Glutamine cyclotransferase. | 0.668 |
AMO63776.1 | acr1_7 | MPHLCCUG_04991 | MPHLCCUG_04992 | Helix-turn-helix protein. | Fatty acyl-CoA reductase. | 0.525 |
AMO63776.1 | hrpB | MPHLCCUG_04991 | MPHLCCUG_04990 | Helix-turn-helix protein. | ATP-dependent RNA helicase HrpB. | 0.709 |
acr1_7 | AMO63774.1 | MPHLCCUG_04992 | MPHLCCUG_04989 | Fatty acyl-CoA reductase. | Glutamine cyclotransferase. | 0.447 |
acr1_7 | AMO63776.1 | MPHLCCUG_04992 | MPHLCCUG_04991 | Fatty acyl-CoA reductase. | Helix-turn-helix protein. | 0.525 |
acr1_7 | hrpB | MPHLCCUG_04992 | MPHLCCUG_04990 | Fatty acyl-CoA reductase. | ATP-dependent RNA helicase HrpB. | 0.491 |
cshA | AMO63774.1 | MPHLCCUG_01689 | MPHLCCUG_04989 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | Glutamine cyclotransferase. | 0.520 |
cshA | hrpB | MPHLCCUG_01689 | MPHLCCUG_04990 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | ATP-dependent RNA helicase HrpB. | 0.850 |
deaD | AMO63774.1 | MPHLCCUG_04009 | MPHLCCUG_04989 | ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | Glutamine cyclotransferase. | 0.520 |
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