STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DL546_001837Uncharacterized protein. (559 aa)    
Predicted Functional Partners:
DL546_003283
RRM domain-containing protein.
    
 
 0.914
DL546_005091
Splicing factor subunit; Belongs to the SF3B5 family.
    
 
 0.902
DL546_000998
TOG domain-containing protein.
    
 
 0.890
RSE1
Pre-mRNA-splicing factor rse1.
    
 
 0.789
DL546_008353
Uncharacterized protein.
    
 
 0.789
DL546_004915
CID domain-containing protein.
   
 
 0.778
DL546_003780
Matrin-type domain-containing protein.
   
 
 0.637
DL546_004983
Uncharacterized protein.
    
 
 0.619
DL546_000567
Matrin-type domain-containing protein.
   
 
 0.524
PRP21_1
SF3a splicing factor complex subunit.
   
 
 0.516
Your Current Organism:
Coniochaeta pulveracea
NCBI taxonomy Id: 177199
Other names: C. pulveracea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.