DL546_002397 protein (Coniochaeta pulveracea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DL546_002397

Uncharacterized protein. (379 aa)

Predicted Functional Partners:

DL546_001613

0.799

DL546_001662

0.779

DL546_000858

0.779

DL546_007265

0.776

MID1

0.745

PMK1

0.745

MPK1

0.745

DL546_008538

0.745

HOG1_1

0.745

DL546_003205

0.676

Your Current Organism:

Coniochaeta pulveracea

NCBI taxonomy Id: 177199
Other names: C. pulveracea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DL546_000858	DL546_002397	A0A420Y1N9	A0A420Y1T0	Uncharacterized protein; Belongs to the glycosyl hydrolase 17 family.	Uncharacterized protein.	0.779
DL546_000858	DL546_003205	A0A420Y1N9	A0A420XY52	Uncharacterized protein; Belongs to the glycosyl hydrolase 17 family.	Uncharacterized protein.	0.683
DL546_000858	DL546_007265	A0A420Y1N9	A0A420Y8Z2	Uncharacterized protein; Belongs to the glycosyl hydrolase 17 family.	SH3 domain-containing protein.	0.885
DL546_000858	PMK1	A0A420Y1N9	A0A420Y9F0	Uncharacterized protein; Belongs to the glycosyl hydrolase 17 family.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.486
DL546_001613	DL546_002397	A0A420XWX1	A0A420Y1T0	Uncharacterized protein.	Uncharacterized protein.	0.799
DL546_001613	DL546_003205	A0A420XWX1	A0A420XY52	Uncharacterized protein.	Uncharacterized protein.	0.856
DL546_001613	DL546_007265	A0A420XWX1	A0A420Y8Z2	Uncharacterized protein.	SH3 domain-containing protein.	0.623
DL546_001662	DL546_002397	A0A420Y0B4	A0A420Y1T0	Uncharacterized protein.	Uncharacterized protein.	0.779
DL546_001662	DL546_003205	A0A420Y0B4	A0A420XY52	Uncharacterized protein.	Uncharacterized protein.	0.683
DL546_001662	DL546_007265	A0A420Y0B4	A0A420Y8Z2	Uncharacterized protein.	SH3 domain-containing protein.	0.885
DL546_002397	DL546_000858	A0A420Y1T0	A0A420Y1N9	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyl hydrolase 17 family.	0.779
DL546_002397	DL546_001613	A0A420Y1T0	A0A420XWX1	Uncharacterized protein.	Uncharacterized protein.	0.799
DL546_002397	DL546_001662	A0A420Y1T0	A0A420Y0B4	Uncharacterized protein.	Uncharacterized protein.	0.779
DL546_002397	DL546_003205	A0A420Y1T0	A0A420XY52	Uncharacterized protein.	Uncharacterized protein.	0.676
DL546_002397	DL546_007265	A0A420Y1T0	A0A420Y8Z2	Uncharacterized protein.	SH3 domain-containing protein.	0.776
DL546_002397	DL546_008538	A0A420Y1T0	A0A420YGN7	Uncharacterized protein.	Uncharacterized protein.	0.745
DL546_002397	HOG1_1	A0A420Y1T0	A0A420YIE1	Uncharacterized protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.745
DL546_002397	MID1	A0A420Y1T0	A0A420Y1U9	Uncharacterized protein.	Stretch-activated cation channel mid1.	0.745
DL546_002397	MPK1	A0A420Y1T0	A0A420YF76	Uncharacterized protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.745
DL546_002397	PMK1	A0A420Y1T0	A0A420Y9F0	Uncharacterized protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.745