STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rebM_1MitM; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)    
Predicted Functional Partners:
APU24553.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.860
hemK
protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
     
 0.666
fccB
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.604
APU26859.1
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.577
ppsC_2
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.557
ppsA
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.521
ppsD
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.521
APU26076.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.503
pks5-1_3
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.500
mas_2
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.500
Your Current Organism:
Mycobacterium tuberculosis variant caprae
NCBI taxonomy Id: 115862
Other names: ATCC BAA-824, CIP 105776, M. tuberculosis variant caprae, Mycobacterium bovis subsp. caprae, Mycobacterium caprae, Mycobacterium tuberculosis subsp. caprae, strain gM-1, strain spc-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.