STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lpqKD-alanyl-D-alanine carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (409 aa)    
Predicted Functional Partners:
APU24615.1
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.878
APU24613.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.876
pbp-1
Serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.737
APU24616.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.665
dac
D-alanyl-D-alanine carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.607
otsB2
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
       0.550
APU26300.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.528
lpqI
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.466
APU25390.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.461
APU26972.1
Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.426
Your Current Organism:
Mycobacterium tuberculosis variant caprae
NCBI taxonomy Id: 115862
Other names: ATCC BAA-824, CIP 105776, M. tuberculosis variant caprae, Mycobacterium bovis subsp. caprae, Mycobacterium caprae, Mycobacterium tuberculosis subsp. caprae, strain gM-1, strain spc-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.