STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lpqLAmidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (500 aa)    
Predicted Functional Partners:
APU24632.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.828
lppZ
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.748
pnbA_2
Para-nitrobenzyl esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.714
pnbA_1
Para-nitrobenzyl esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.714
lipT
Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.714
otsB2
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
  
 
 0.650
metH
Methionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.632
thiS
Thiamine biosynthesis protein ThiS; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.614
oppA_1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.613
BBG46_07340
Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.611
Your Current Organism:
Mycobacterium tuberculosis variant caprae
NCBI taxonomy Id: 115862
Other names: ATCC BAA-824, CIP 105776, M. tuberculosis variant caprae, Mycobacterium bovis subsp. caprae, Mycobacterium caprae, Mycobacterium tuberculosis subsp. caprae, strain gM-1, strain spc-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.