STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadD16fatty-acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)    
Predicted Functional Partners:
APU26492.1
3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.774
ppsA
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.747
ppsD
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.747
pks5-1_3
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.719
ppsC_2
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.719
mas_2
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.719
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.715
eryA_1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.688
ppsB
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.688
pks7
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.673
Your Current Organism:
Mycobacterium tuberculosis variant caprae
NCBI taxonomy Id: 115862
Other names: ATCC BAA-824, CIP 105776, M. tuberculosis variant caprae, Mycobacterium bovis subsp. caprae, Mycobacterium caprae, Mycobacterium tuberculosis subsp. caprae, strain gM-1, strain spc-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.