STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PE15Cell motility protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)    
Predicted Functional Partners:
APU25501.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.960
ppe_2
Hypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.845
APU24484.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.794
PPE4
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.734
PPE36
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mycobacterial PPE family.
      
 0.718
PE25
PE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.632
PE16
PE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.614
PPE42
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mycobacterial PPE family.
      
 0.613
espE
Secretion protein EspE; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.613
pyrF
Orotidine 5'-phosphate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.475
Your Current Organism:
Mycobacterium tuberculosis variant caprae
NCBI taxonomy Id: 115862
Other names: ATCC BAA-824, CIP 105776, M. tuberculosis variant caprae, Mycobacterium bovis subsp. caprae, Mycobacterium caprae, Mycobacterium tuberculosis subsp. caprae, strain gM-1, strain spc-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.