STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
limB_2Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)    
Predicted Functional Partners:
limA
Limonene-1,2-epoxide hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.958
APU25978.1
Epoxide hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.928
APU25977.1
Oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.883
APU25979.1
Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.852
ribA1
Riboflavin biosynthesis protein RibA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.791
lvr_3-2
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.761
echA13
acyl-CoA dehydrogenase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.738
fgd2
F420-dependent hydroxymycolic acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.652
APU26177.1
LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.652
folP1
Dihydropteroate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.586
Your Current Organism:
Mycobacterium tuberculosis variant caprae
NCBI taxonomy Id: 115862
Other names: ATCC BAA-824, CIP 105776, M. tuberculosis variant caprae, Mycobacterium bovis subsp. caprae, Mycobacterium caprae, Mycobacterium tuberculosis subsp. caprae, strain gM-1, strain spc-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.