STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbnRibonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA. (280 aa)    
Predicted Functional Partners:
pkn1
Sulfatase-modifying factor 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.708
APU26758.1
Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.670
APU24693.1
SDR family oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.660
APU27076.1
TIGR02569 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.660
APU27941.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.555
APU26391.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.550
APU24854.1
DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.460
rph
Ribonuclease PH; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RNase PH family.
  
  
 0.443
APU27607.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.436
APU24293.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.430
Your Current Organism:
Mycobacterium tuberculosis variant caprae
NCBI taxonomy Id: 115862
Other names: ATCC BAA-824, CIP 105776, M. tuberculosis variant caprae, Mycobacterium bovis subsp. caprae, Mycobacterium caprae, Mycobacterium tuberculosis subsp. caprae, strain gM-1, strain spc-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.