STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aldAlanine dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (239 aa)    
Predicted Functional Partners:
APU26704.1
Alanine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.994
APU24558.1
Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.968
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
 
 0.929
lrp_2
AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.730
regX3
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.665
copA
Oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.641
gltA1
2-methylcitrate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the citrate synthase family.
      
 0.640
gltB
Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.611
APU26702.1
Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.508
nadE
NAD(+) synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source.
  
 
 0.498
Your Current Organism:
Mycobacterium tuberculosis variant caprae
NCBI taxonomy Id: 115862
Other names: ATCC BAA-824, CIP 105776, M. tuberculosis variant caprae, Mycobacterium bovis subsp. caprae, Mycobacterium caprae, Mycobacterium tuberculosis subsp. caprae, strain gM-1, strain spc-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.