Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RN08_0275 | RN08_0276 | acetyl-CoA acetyltransferase FadA. | acyl-CoA dehydrogenase FadE5. | 0.731 |
RN08_0275 | RN08_0956 | acetyl-CoA acetyltransferase FadA. | Fatty oxidation protein FadB. | 0.998 |
RN08_0275 | RN08_1007 | acetyl-CoA acetyltransferase FadA. | enoyl-CoA hydratase EchA6. | 0.751 |
RN08_0275 | RN08_1202 | acetyl-CoA acetyltransferase FadA. | enoyl-CoA hydratase EchA8. | 0.747 |
RN08_0275 | RN08_1482 | acetyl-CoA acetyltransferase FadA. | acetyl-CoA acetyltransferase. | 0.922 |
RN08_0275 | RN08_2269 | acetyl-CoA acetyltransferase FadA. | Polyketide synthase. | 0.743 |
RN08_0275 | RN08_3338 | acetyl-CoA acetyltransferase FadA. | Electron transfer flavoprotein subunit alpha. | 0.644 |
RN08_0276 | RN08_0275 | acyl-CoA dehydrogenase FadE5. | acetyl-CoA acetyltransferase FadA. | 0.731 |
RN08_0276 | RN08_0541 | acyl-CoA dehydrogenase FadE5. | Hypothetical protein. | 0.746 |
RN08_0276 | RN08_0956 | acyl-CoA dehydrogenase FadE5. | Fatty oxidation protein FadB. | 0.887 |
RN08_0276 | RN08_1007 | acyl-CoA dehydrogenase FadE5. | enoyl-CoA hydratase EchA6. | 0.703 |
RN08_0276 | RN08_1202 | acyl-CoA dehydrogenase FadE5. | enoyl-CoA hydratase EchA8. | 0.702 |
RN08_0276 | RN08_1337 | acyl-CoA dehydrogenase FadE5. | fatty-acid--CoA ligase FadD36. | 0.811 |
RN08_0276 | RN08_1482 | acyl-CoA dehydrogenase FadE5. | acetyl-CoA acetyltransferase. | 0.713 |
RN08_0276 | RN08_2269 | acyl-CoA dehydrogenase FadE5. | Polyketide synthase. | 0.773 |
RN08_0276 | RN08_3338 | acyl-CoA dehydrogenase FadE5. | Electron transfer flavoprotein subunit alpha. | 0.824 |
RN08_0276 | RN08_3339 | acyl-CoA dehydrogenase FadE5. | Electron transfer flavoprotein subunit beta. | 0.786 |
RN08_0541 | RN08_0276 | Hypothetical protein. | acyl-CoA dehydrogenase FadE5. | 0.746 |
RN08_0956 | RN08_0275 | Fatty oxidation protein FadB. | acetyl-CoA acetyltransferase FadA. | 0.998 |
RN08_0956 | RN08_0276 | Fatty oxidation protein FadB. | acyl-CoA dehydrogenase FadE5. | 0.887 |
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