Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RN08_0294 | RN08_0295 | Aminoglycoside 2'-N-acetyltransferase. | Hypothetical protein. | 0.980 |
RN08_0294 | RN08_0296 | Aminoglycoside 2'-N-acetyltransferase. | Hypothetical protein. | 0.938 |
RN08_0294 | RN08_0297 | Aminoglycoside 2'-N-acetyltransferase. | Iron ABC transporter substrate-binding lipoprotein. | 0.813 |
RN08_0294 | RN08_0298 | Aminoglycoside 2'-N-acetyltransferase. | 5-oxoprolinase OplA. | 0.515 |
RN08_0295 | RN08_0294 | Hypothetical protein. | Aminoglycoside 2'-N-acetyltransferase. | 0.980 |
RN08_0295 | RN08_0296 | Hypothetical protein. | Hypothetical protein. | 0.999 |
RN08_0295 | RN08_0297 | Hypothetical protein. | Iron ABC transporter substrate-binding lipoprotein. | 0.774 |
RN08_0295 | RN08_0298 | Hypothetical protein. | 5-oxoprolinase OplA. | 0.584 |
RN08_0296 | RN08_0294 | Hypothetical protein. | Aminoglycoside 2'-N-acetyltransferase. | 0.938 |
RN08_0296 | RN08_0295 | Hypothetical protein. | Hypothetical protein. | 0.999 |
RN08_0296 | RN08_0297 | Hypothetical protein. | Iron ABC transporter substrate-binding lipoprotein. | 0.892 |
RN08_0296 | RN08_0298 | Hypothetical protein. | 5-oxoprolinase OplA. | 0.641 |
RN08_0297 | RN08_0294 | Iron ABC transporter substrate-binding lipoprotein. | Aminoglycoside 2'-N-acetyltransferase. | 0.813 |
RN08_0297 | RN08_0295 | Iron ABC transporter substrate-binding lipoprotein. | Hypothetical protein. | 0.774 |
RN08_0297 | RN08_0296 | Iron ABC transporter substrate-binding lipoprotein. | Hypothetical protein. | 0.892 |
RN08_0297 | RN08_0298 | Iron ABC transporter substrate-binding lipoprotein. | 5-oxoprolinase OplA. | 0.942 |
RN08_0297 | RN08_1417 | Iron ABC transporter substrate-binding lipoprotein. | Hypothetical protein. | 0.602 |
RN08_0297 | RN08_1442 | Iron ABC transporter substrate-binding lipoprotein. | Hypothetical protein. | 0.612 |
RN08_0297 | RN08_2062 | Iron ABC transporter substrate-binding lipoprotein. | Molybdate ABC transporter substrate-binding lipoprotein ModA. | 0.564 |
RN08_0297 | RN08_2663 | Iron ABC transporter substrate-binding lipoprotein. | Sulfate ABC transporter substrate-binding lipoprotein SubI. | 0.618 |
page 1 of 2