STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0297Iron ABC transporter substrate-binding lipoprotein. (330 aa)    
Predicted Functional Partners:
RN08_0298
5-oxoprolinase OplA.
     
 0.942
RN08_0296
Hypothetical protein.
     
 0.892
RN08_3355
FeIII-dicitrate-binding periplasmic lipoprotein.
 
  
 0.861
RN08_0294
Aminoglycoside 2'-N-acetyltransferase.
 
     0.813
RN08_0295
Hypothetical protein.
       0.774
RN08_2663
Sulfate ABC transporter substrate-binding lipoprotein SubI.
     
 0.618
RN08_1442
Hypothetical protein.
   
    0.612
RN08_1417
Hypothetical protein.
  
 
 0.602
RN08_3190
Mycobactin utilization protein ViuB.
 
  
 0.596
RN08_2062
Molybdate ABC transporter substrate-binding lipoprotein ModA.
 
  
 0.564
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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