Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RN08_0371 | RN08_0372 | Hypothetical protein. | Hypothetical protein. | 0.854 |
RN08_0371 | RN08_0373 | Hypothetical protein. | Dehydrogenase/reductase. | 0.551 |
RN08_0371 | RN08_0583 | Hypothetical protein. | Methyltransferase. | 0.635 |
RN08_0371 | RN08_1439 | Hypothetical protein. | Bifunctional sulfate adenyltransferase subunit 1 CysN/adenylylsulfate kinase CysC. | 0.552 |
RN08_0371 | RN08_1455 | Hypothetical protein. | Release factor glutamine methyltransferase. | 0.661 |
RN08_0371 | RN08_1709 | Hypothetical protein. | Methyltransferase. | 0.656 |
RN08_0371 | RN08_2036 | Hypothetical protein. | Glycine dehydrogenase. | 0.548 |
RN08_0371 | RN08_3231 | Hypothetical protein. | Phthiocerol synthesis polyketide synthase type I PpsC; Overlaps another CDS with the same product name. | 0.583 |
RN08_0371 | RN08_3233 | Hypothetical protein. | Phthiocerol synthesis polyketide synthase type I PpsD. | 0.583 |
RN08_0371 | RN08_3254 | Hypothetical protein. | Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase. | 0.612 |
RN08_0372 | RN08_0371 | Hypothetical protein. | Hypothetical protein. | 0.854 |
RN08_0372 | RN08_0373 | Hypothetical protein. | Dehydrogenase/reductase. | 0.616 |
RN08_0373 | RN08_0371 | Dehydrogenase/reductase. | Hypothetical protein. | 0.551 |
RN08_0373 | RN08_0372 | Dehydrogenase/reductase. | Hypothetical protein. | 0.616 |
RN08_0373 | RN08_2036 | Dehydrogenase/reductase. | Glycine dehydrogenase. | 0.829 |
RN08_0373 | RN08_3231 | Dehydrogenase/reductase. | Phthiocerol synthesis polyketide synthase type I PpsC; Overlaps another CDS with the same product name. | 0.470 |
RN08_0373 | RN08_3233 | Dehydrogenase/reductase. | Phthiocerol synthesis polyketide synthase type I PpsD. | 0.470 |
RN08_0583 | RN08_0371 | Methyltransferase. | Hypothetical protein. | 0.635 |
RN08_0583 | RN08_1439 | Methyltransferase. | Bifunctional sulfate adenyltransferase subunit 1 CysN/adenylylsulfate kinase CysC. | 0.505 |
RN08_0583 | RN08_1709 | Methyltransferase. | Methyltransferase. | 0.590 |
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