Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RN08_0390 | RN08_0416 | Hypothetical protein. | Hypothetical protein. | 0.900 |
RN08_0390 | RN08_0417 | Hypothetical protein. | Hypothetical protein. | 0.595 |
RN08_0390 | RN08_0418 | Hypothetical protein. | Carbon monoxide dehydrogenase large subunit. | 0.741 |
RN08_0390 | RN08_0419 | Hypothetical protein. | Carbon monoxide dehydrogenase small subunit. | 0.403 |
RN08_0390 | RN08_0420 | Hypothetical protein. | Carbon monoxide dehydrogenase medium subunit; Overlaps another CDS with the same product name. | 0.426 |
RN08_0390 | RN08_0421 | Hypothetical protein. | Carbon monoxide dehydrogenase medium subunit; Overlaps another CDS with the same product name. | 0.426 |
RN08_0390 | RN08_0422 | Hypothetical protein. | Hypothetical protein. | 0.877 |
RN08_0413 | RN08_0414 | Hypothetical protein. | Membrane oxidoreductase. | 0.970 |
RN08_0413 | RN08_0415 | Hypothetical protein. | Oxidoreductase. | 0.967 |
RN08_0413 | RN08_0416 | Hypothetical protein. | Hypothetical protein. | 0.906 |
RN08_0413 | RN08_0417 | Hypothetical protein. | Hypothetical protein. | 0.963 |
RN08_0413 | RN08_0418 | Hypothetical protein. | Carbon monoxide dehydrogenase large subunit. | 0.958 |
RN08_0413 | RN08_0419 | Hypothetical protein. | Carbon monoxide dehydrogenase small subunit. | 0.901 |
RN08_0413 | RN08_0420 | Hypothetical protein. | Carbon monoxide dehydrogenase medium subunit; Overlaps another CDS with the same product name. | 0.931 |
RN08_0413 | RN08_0421 | Hypothetical protein. | Carbon monoxide dehydrogenase medium subunit; Overlaps another CDS with the same product name. | 0.938 |
RN08_0413 | RN08_0422 | Hypothetical protein. | Hypothetical protein. | 0.891 |
RN08_0414 | RN08_0413 | Membrane oxidoreductase. | Hypothetical protein. | 0.970 |
RN08_0414 | RN08_0415 | Membrane oxidoreductase. | Oxidoreductase. | 0.975 |
RN08_0414 | RN08_0416 | Membrane oxidoreductase. | Hypothetical protein. | 0.883 |
RN08_0414 | RN08_0417 | Membrane oxidoreductase. | Hypothetical protein. | 0.954 |
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