STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0450Lipoprotein LpqK. (409 aa)    
Predicted Functional Partners:
RN08_0451
acyl-CoA dehydrogenase FadE7.
       0.874
RN08_1009
Hypothetical protein.
  
   
 0.748
RN08_0269
Lipoprotein LpqI.
  
 
 0.713
RN08_0452
Transmembrane protein.
       0.654
RN08_0537
Lipoprotein LprQ.
    
 0.576
RN08_2402
Penicillin-binding membrane protein PbpB.
    
 0.555
RN08_0021
Penicillin-binding protein PbpA.
    
 0.550
RN08_0448
Hypothetical protein.
       0.536
RN08_3720
Trehalose 6-phosphate phosphatase.
       0.536
RN08_2550
Hypothetical protein.
 
     0.513
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.