STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_0935Lipoprotein LpqR. (258 aa)    
Predicted Functional Partners:
RN08_3289
D-alanine--D-alanine ligase.
    
 0.830
RN08_0936
Hypothetical protein.
       0.775
RN08_3849
Hypothetical protein.
      
 0.523
RN08_0269
Lipoprotein LpqI.
   
  0.502
RN08_2800
Hypothetical protein.
    
  0.449
RN08_3974
Hypothetical protein.
    
  0.449
RN08_1400
Lipoprotein LprE.
     
 0.410
RN08_0469
Lipoprotein aminopeptidase LpqL.
      
 0.408
RN08_3996
Lipoprotein LpqG.
      
 0.408
RN08_4172
O-antigen/lipopolysaccharide ABC transporter permease RfbD.
      
 0.407
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.