STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1422Lipoprotein LprA. (244 aa)    
Predicted Functional Partners:
RN08_1042
Phosphate ABC transporter substrate-binding lipoprotein PstS.
      
 0.792
RN08_4149
Lipoprotein LpqH.
      
 0.792
RN08_1040
Phosphate ABC transporter substrate-binding lipoprotein PstS.
      
 0.747
RN08_0549
Hypothetical protein.
  
     0.685
RN08_3238
Phthiocerol/phthiodiolone dimycocerosyl transferase.
  
     0.672
RN08_1421
Hypothetical protein.
       0.671
RN08_0655
Lipoprotein LpqN.
      
 0.644
RN08_2622
Cytidine deaminase.
  
     0.627
RN08_1534
Lipoprotein LprF; Overlaps another CDS with the same product name.
 
     0.608
RN08_4306
Hypothetical protein.
  
     0.586
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.