STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1780Ionic transporter integral membrane protein ChaA. (360 aa)    
Predicted Functional Partners:
RN08_3042
Ribonuclease VapC21.
  
     0.513
RN08_1776
Phosphoribosyl isomerase A.
     
 0.503
RN08_2533
Na(+)/H(+) transporter.
  
 
 
 0.487
RN08_1778
Imidazole glycerol phosphate synthase subunit HisF.
       0.483
RN08_1779
phosphoribosyl-AMP cyclohydrolase.
       0.480
RN08_1777
Inositol-monophosphatase ImpA.
       0.472
RN08_1775
Imidazole glycerol phosphate synthase subunit HisH.
       0.463
RN08_1774
Imidazole glycerol-phosphate dehydratase.
       0.462
RN08_0259
Hypothetical protein.
  
     0.459
RN08_1772
Histidinol dehydrogenase.
       0.458
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.