Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RN08_0017 | RN08_2029 | Membrane protein. | Hypothetical protein. | 0.873 |
RN08_0017 | RN08_2030 | Membrane protein. | Hypothetical protein. | 0.774 |
RN08_2025 | RN08_2026 | Acetolactate synthase large subunit IlvG. | Protein translocase subunit SecA. | 0.626 |
RN08_2025 | RN08_2027 | Acetolactate synthase large subunit IlvG. | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. | 0.677 |
RN08_2025 | RN08_2028 | Acetolactate synthase large subunit IlvG. | Hypothetical protein. | 0.672 |
RN08_2025 | RN08_2029 | Acetolactate synthase large subunit IlvG. | Hypothetical protein. | 0.645 |
RN08_2025 | RN08_2030 | Acetolactate synthase large subunit IlvG. | Hypothetical protein. | 0.641 |
RN08_2025 | RN08_2031 | Acetolactate synthase large subunit IlvG. | Glycine cleavage system protein H. | 0.629 |
RN08_2026 | RN08_2025 | Protein translocase subunit SecA. | Acetolactate synthase large subunit IlvG. | 0.626 |
RN08_2026 | RN08_2027 | Protein translocase subunit SecA. | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. | 0.786 |
RN08_2026 | RN08_2028 | Protein translocase subunit SecA. | Hypothetical protein. | 0.731 |
RN08_2026 | RN08_2029 | Protein translocase subunit SecA. | Hypothetical protein. | 0.696 |
RN08_2026 | RN08_2030 | Protein translocase subunit SecA. | Hypothetical protein. | 0.680 |
RN08_2026 | RN08_2031 | Protein translocase subunit SecA. | Glycine cleavage system protein H. | 0.661 |
RN08_2026 | RN08_2032 | Protein translocase subunit SecA. | Glycogen accumulation regulator GarA. | 0.546 |
RN08_2026 | RN08_2034 | Protein translocase subunit SecA. | Hypothetical protein. | 0.531 |
RN08_2027 | RN08_2025 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. | Acetolactate synthase large subunit IlvG. | 0.677 |
RN08_2027 | RN08_2026 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. | Protein translocase subunit SecA. | 0.786 |
RN08_2027 | RN08_2028 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. | Hypothetical protein. | 0.878 |
RN08_2027 | RN08_2029 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. | Hypothetical protein. | 0.793 |
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