Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RN08_2052 | RN08_2053 | Esterase. | Urease subunit gamma. | 0.792 |
RN08_2052 | RN08_2054 | Esterase. | Urease subunit beta. | 0.779 |
RN08_2052 | RN08_2055 | Esterase. | Urease subunit alpha. | 0.792 |
RN08_2052 | RN08_2056 | Esterase. | Urease accessory protein UreF. | 0.787 |
RN08_2052 | RN08_2057 | Esterase. | Urease accessory protein UreG. | 0.699 |
RN08_2052 | RN08_2058 | Esterase. | Urease accessory protein UreD. | 0.698 |
RN08_2053 | RN08_2052 | Urease subunit gamma. | Esterase. | 0.792 |
RN08_2053 | RN08_2054 | Urease subunit gamma. | Urease subunit beta. | 0.999 |
RN08_2053 | RN08_2055 | Urease subunit gamma. | Urease subunit alpha. | 0.999 |
RN08_2053 | RN08_2056 | Urease subunit gamma. | Urease accessory protein UreF. | 0.990 |
RN08_2053 | RN08_2057 | Urease subunit gamma. | Urease accessory protein UreG. | 0.992 |
RN08_2053 | RN08_2058 | Urease subunit gamma. | Urease accessory protein UreD. | 0.984 |
RN08_2053 | RN08_3149 | Urease subunit gamma. | Hypothetical protein. | 0.791 |
RN08_2053 | RN08_3150 | Urease subunit gamma. | Hypothetical protein. | 0.791 |
RN08_2053 | RN08_4263 | Urease subunit gamma. | Glutamate synthase large subunit. | 0.542 |
RN08_2054 | RN08_2052 | Urease subunit beta. | Esterase. | 0.779 |
RN08_2054 | RN08_2053 | Urease subunit beta. | Urease subunit gamma. | 0.999 |
RN08_2054 | RN08_2055 | Urease subunit beta. | Urease subunit alpha. | 0.999 |
RN08_2054 | RN08_2056 | Urease subunit beta. | Urease accessory protein UreF. | 0.992 |
RN08_2054 | RN08_2057 | Urease subunit beta. | Urease accessory protein UreG. | 0.997 |
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