Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RN08_1842 | RN08_1843 | Polyketide synthase. | Polyketide synthase. | 0.999 |
RN08_1842 | RN08_1844 | Polyketide synthase. | Polyketide synthase. | 0.999 |
RN08_1842 | RN08_2143 | Polyketide synthase. | Short-chain type dehydrogenase/reductase. | 0.760 |
RN08_1842 | RN08_2269 | Polyketide synthase. | Polyketide synthase. | 0.999 |
RN08_1842 | RN08_2798 | Polyketide synthase. | Fatty acid synthase. | 0.999 |
RN08_1842 | RN08_2799 | Polyketide synthase. | Fatty acid synthase. | 0.999 |
RN08_1842 | RN08_3231 | Polyketide synthase. | Phthiocerol synthesis polyketide synthase type I PpsC; Overlaps another CDS with the same product name. | 0.999 |
RN08_1842 | RN08_3233 | Polyketide synthase. | Phthiocerol synthesis polyketide synthase type I PpsD. | 0.999 |
RN08_1842 | RN08_3248 | Polyketide synthase. | Polyketide synthase. | 0.996 |
RN08_1842 | RN08_4193 | Polyketide synthase. | Polyketide synthase; Overlaps another CDS with the same product name. | 0.997 |
RN08_1843 | RN08_1842 | Polyketide synthase. | Polyketide synthase. | 0.999 |
RN08_1843 | RN08_1844 | Polyketide synthase. | Polyketide synthase. | 0.999 |
RN08_1843 | RN08_2143 | Polyketide synthase. | Short-chain type dehydrogenase/reductase. | 0.760 |
RN08_1843 | RN08_2269 | Polyketide synthase. | Polyketide synthase. | 0.999 |
RN08_1843 | RN08_2798 | Polyketide synthase. | Fatty acid synthase. | 0.999 |
RN08_1843 | RN08_2799 | Polyketide synthase. | Fatty acid synthase. | 0.999 |
RN08_1843 | RN08_3231 | Polyketide synthase. | Phthiocerol synthesis polyketide synthase type I PpsC; Overlaps another CDS with the same product name. | 0.999 |
RN08_1843 | RN08_3233 | Polyketide synthase. | Phthiocerol synthesis polyketide synthase type I PpsD. | 0.999 |
RN08_1843 | RN08_3248 | Polyketide synthase. | Polyketide synthase. | 0.997 |
RN08_1843 | RN08_4193 | Polyketide synthase. | Polyketide synthase; Overlaps another CDS with the same product name. | 0.997 |
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