Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RN08_0240 | RN08_1326 | Hypothetical protein. | Acyltransferase PapA. | 0.716 |
RN08_0240 | RN08_2185 | Hypothetical protein. | Hypothetical protein. | 0.734 |
RN08_0240 | RN08_2915 | Hypothetical protein. | Hypothetical protein. | 0.407 |
RN08_0240 | RN08_2971 | Hypothetical protein. | Antibiotic ABC transporter permease. | 0.741 |
RN08_0240 | RN08_2972 | Hypothetical protein. | Antibiotic ABC transporter permease. | 0.744 |
RN08_0240 | RN08_3239 | Hypothetical protein. | Multifunctional mycocerosic acid synthase; Overlaps another CDS with the same product name. | 0.743 |
RN08_0240 | RN08_4222 | Hypothetical protein. | Acyltransferase PapA. | 0.692 |
RN08_0240 | RN08_4312 | Hypothetical protein. | anti-sigma-M factor RsmA. | 0.533 |
RN08_1061 | RN08_2185 | Integral membrane protein. | Hypothetical protein. | 0.705 |
RN08_1061 | RN08_2915 | Integral membrane protein. | Hypothetical protein. | 0.730 |
RN08_1061 | RN08_2971 | Integral membrane protein. | Antibiotic ABC transporter permease. | 0.694 |
RN08_1061 | RN08_2972 | Integral membrane protein. | Antibiotic ABC transporter permease. | 0.704 |
RN08_1061 | RN08_3239 | Integral membrane protein. | Multifunctional mycocerosic acid synthase; Overlaps another CDS with the same product name. | 0.406 |
RN08_1061 | RN08_4312 | Integral membrane protein. | anti-sigma-M factor RsmA. | 0.736 |
RN08_1325 | RN08_1326 | Polyketide beta-ketoacyl synthase. | Acyltransferase PapA. | 0.990 |
RN08_1325 | RN08_2185 | Polyketide beta-ketoacyl synthase. | Hypothetical protein. | 0.674 |
RN08_1325 | RN08_2915 | Polyketide beta-ketoacyl synthase. | Hypothetical protein. | 0.438 |
RN08_1325 | RN08_3239 | Polyketide beta-ketoacyl synthase. | Multifunctional mycocerosic acid synthase; Overlaps another CDS with the same product name. | 0.999 |
RN08_1325 | RN08_4222 | Polyketide beta-ketoacyl synthase. | Acyltransferase PapA. | 0.937 |
RN08_1326 | RN08_0240 | Acyltransferase PapA. | Hypothetical protein. | 0.716 |
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