STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2617Decaprenyl diphosphate synthase. (296 aa)    
Predicted Functional Partners:
RN08_1217
(2Z,6E)-farnesyl diphosphate synthase.
  
  
0.959
RN08_0597
1,4-dihydroxy-2-naphthoate octaprenyltransferase.
     
 0.938
RN08_2368
Undecaprenyl-diphosphatase.
    
 0.927
RN08_2616
Hypothetical protein.
  
  
 0.927
RN08_2618
DNA repair protein RecO.
  
  
 0.926
RN08_0628
Polyprenyl-diphosphate synthase GrcC.
 
 
 0.889
RN08_2410
Geranylgeranyl pyrophosphate synthetase IdsA.
 
 
 0.875
RN08_3749
Multifunctional dimethylallyltransferase/geranyltranstransferase/farnesyl transtransferase.
 
 
 0.832
RN08_3165
1-deoxy-D-xylulose 5-phosphate reductoisomerase.
  
  
 0.824
RN08_3730
Polyprenyl synthetase IdsB.
 
 
 0.805
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.