Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RN08_0538 | RN08_0792 | Short-chain type oxidoreductase. | Hypothetical protein. | 0.658 |
RN08_0538 | RN08_2670 | Short-chain type oxidoreductase. | Ribonuclease Z. | 0.657 |
RN08_0538 | RN08_3129 | Short-chain type oxidoreductase. | Bifunctional oligoribonuclease/PAP phosphatase NrnA. | 0.657 |
RN08_0538 | RN08_3537 | Short-chain type oxidoreductase. | Hypothetical protein. | 0.660 |
RN08_0792 | RN08_0538 | Hypothetical protein. | Short-chain type oxidoreductase. | 0.658 |
RN08_0792 | RN08_2670 | Hypothetical protein. | Ribonuclease Z. | 0.718 |
RN08_0792 | RN08_3129 | Hypothetical protein. | Bifunctional oligoribonuclease/PAP phosphatase NrnA. | 0.523 |
RN08_0792 | RN08_3537 | Hypothetical protein. | Hypothetical protein. | 0.657 |
RN08_1300 | RN08_1301 | Hypothetical protein. | Hypothetical protein. | 0.828 |
RN08_1300 | RN08_1499 | Hypothetical protein. | Ribonuclease PH. | 0.504 |
RN08_1300 | RN08_2670 | Hypothetical protein. | Ribonuclease Z. | 0.469 |
RN08_1301 | RN08_1300 | Hypothetical protein. | Hypothetical protein. | 0.828 |
RN08_1301 | RN08_1499 | Hypothetical protein. | Ribonuclease PH. | 0.504 |
RN08_1301 | RN08_2670 | Hypothetical protein. | Ribonuclease Z. | 0.469 |
RN08_1499 | RN08_1300 | Ribonuclease PH. | Hypothetical protein. | 0.504 |
RN08_1499 | RN08_1301 | Ribonuclease PH. | Hypothetical protein. | 0.504 |
RN08_1499 | RN08_2670 | Ribonuclease PH. | Ribonuclease Z. | 0.632 |
RN08_1499 | RN08_2712 | Ribonuclease PH. | Ribonuclease E. | 0.945 |
RN08_2669 | RN08_2670 | Hypothetical protein. | Ribonuclease Z. | 0.553 |
RN08_2670 | RN08_0538 | Ribonuclease Z. | Short-chain type oxidoreductase. | 0.657 |
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