Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RN08_0636 | RN08_0637 | Vitamin B12-dependent ribonucleoside-diphosphate reductase; Overlaps another CDS with the same product name. | Vitamin B12-dependent ribonucleoside-diphosphate reductase; Overlaps another CDS with the same product name. | 0.994 |
RN08_0636 | RN08_2217 | Vitamin B12-dependent ribonucleoside-diphosphate reductase; Overlaps another CDS with the same product name. | Hypothetical protein. | 0.618 |
RN08_0636 | RN08_2219 | Vitamin B12-dependent ribonucleoside-diphosphate reductase; Overlaps another CDS with the same product name. | Hypothetical protein. | 0.767 |
RN08_0636 | RN08_2911 | Vitamin B12-dependent ribonucleoside-diphosphate reductase; Overlaps another CDS with the same product name. | Hypothetical protein. | 0.616 |
RN08_0636 | RN08_2912 | Vitamin B12-dependent ribonucleoside-diphosphate reductase; Overlaps another CDS with the same product name. | Hypothetical protein. | 0.614 |
RN08_0636 | RN08_2913 | Vitamin B12-dependent ribonucleoside-diphosphate reductase; Overlaps another CDS with the same product name. | RNA-splicing ligase RtcB. | 0.538 |
RN08_0637 | RN08_0636 | Vitamin B12-dependent ribonucleoside-diphosphate reductase; Overlaps another CDS with the same product name. | Vitamin B12-dependent ribonucleoside-diphosphate reductase; Overlaps another CDS with the same product name. | 0.994 |
RN08_0637 | RN08_2217 | Vitamin B12-dependent ribonucleoside-diphosphate reductase; Overlaps another CDS with the same product name. | Hypothetical protein. | 0.618 |
RN08_0637 | RN08_2219 | Vitamin B12-dependent ribonucleoside-diphosphate reductase; Overlaps another CDS with the same product name. | Hypothetical protein. | 0.767 |
RN08_0637 | RN08_2911 | Vitamin B12-dependent ribonucleoside-diphosphate reductase; Overlaps another CDS with the same product name. | Hypothetical protein. | 0.616 |
RN08_0637 | RN08_2912 | Vitamin B12-dependent ribonucleoside-diphosphate reductase; Overlaps another CDS with the same product name. | Hypothetical protein. | 0.614 |
RN08_0637 | RN08_2913 | Vitamin B12-dependent ribonucleoside-diphosphate reductase; Overlaps another CDS with the same product name. | RNA-splicing ligase RtcB. | 0.538 |
RN08_1401 | RN08_2912 | ATP-dependent RNA helicase DeaD. | Hypothetical protein. | 0.654 |
RN08_1401 | RN08_2913 | ATP-dependent RNA helicase DeaD. | RNA-splicing ligase RtcB. | 0.780 |
RN08_1401 | RN08_3421 | ATP-dependent RNA helicase DeaD. | Peptide chain release factor PrfB. | 0.797 |
RN08_2217 | RN08_0636 | Hypothetical protein. | Vitamin B12-dependent ribonucleoside-diphosphate reductase; Overlaps another CDS with the same product name. | 0.618 |
RN08_2217 | RN08_0637 | Hypothetical protein. | Vitamin B12-dependent ribonucleoside-diphosphate reductase; Overlaps another CDS with the same product name. | 0.618 |
RN08_2217 | RN08_2219 | Hypothetical protein. | Hypothetical protein. | 0.950 |
RN08_2217 | RN08_2378 | Hypothetical protein. | Hypothetical protein. | 0.695 |
RN08_2217 | RN08_2913 | Hypothetical protein. | RNA-splicing ligase RtcB. | 0.416 |
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