Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RN08_0136 | RN08_0307 | Oxidative stress response regulatory protein OxyS. | Transcriptional regulator. | 0.656 |
RN08_0136 | RN08_0423 | Oxidative stress response regulatory protein OxyS. | HTH-type transcriptional regulator. | 0.773 |
RN08_0136 | RN08_1151 | Oxidative stress response regulatory protein OxyS. | Transcriptional regulator KdpE. | 0.799 |
RN08_0136 | RN08_1857 | Oxidative stress response regulatory protein OxyS. | HTH-type transcriptional regulator Cmr. | 0.777 |
RN08_0136 | RN08_1916 | Oxidative stress response regulatory protein OxyS. | Hypothetical protein. | 0.769 |
RN08_0136 | RN08_3486 | Oxidative stress response regulatory protein OxyS. | Methanol dehydrogenase transcriptional regulator MoxR. | 0.721 |
RN08_0307 | RN08_0136 | Transcriptional regulator. | Oxidative stress response regulatory protein OxyS. | 0.656 |
RN08_0307 | RN08_0423 | Transcriptional regulator. | HTH-type transcriptional regulator. | 0.674 |
RN08_0307 | RN08_1151 | Transcriptional regulator. | Transcriptional regulator KdpE. | 0.745 |
RN08_0307 | RN08_1857 | Transcriptional regulator. | HTH-type transcriptional regulator Cmr. | 0.716 |
RN08_0307 | RN08_1916 | Transcriptional regulator. | Hypothetical protein. | 0.738 |
RN08_0307 | RN08_3486 | Transcriptional regulator. | Methanol dehydrogenase transcriptional regulator MoxR. | 0.757 |
RN08_0423 | RN08_0136 | HTH-type transcriptional regulator. | Oxidative stress response regulatory protein OxyS. | 0.773 |
RN08_0423 | RN08_0307 | HTH-type transcriptional regulator. | Transcriptional regulator. | 0.674 |
RN08_0423 | RN08_1151 | HTH-type transcriptional regulator. | Transcriptional regulator KdpE. | 0.729 |
RN08_0423 | RN08_1857 | HTH-type transcriptional regulator. | HTH-type transcriptional regulator Cmr. | 0.733 |
RN08_0423 | RN08_1916 | HTH-type transcriptional regulator. | Hypothetical protein. | 0.773 |
RN08_0423 | RN08_3486 | HTH-type transcriptional regulator. | Methanol dehydrogenase transcriptional regulator MoxR. | 0.758 |
RN08_1151 | RN08_0136 | Transcriptional regulator KdpE. | Oxidative stress response regulatory protein OxyS. | 0.799 |
RN08_1151 | RN08_0307 | Transcriptional regulator KdpE. | Transcriptional regulator. | 0.745 |
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