STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_4125Oxidoreductase; Overlaps another CDS with the same product name. (224 aa)    
Predicted Functional Partners:
RN08_4126
Oxidoreductase; Overlaps another CDS with the same product name.
    0.993
RN08_4124
Diacylglycerol O-acyltransferase.
  
  0.973
RN08_3397
Oxidoreductase SadH.
 
 
 0.573
RN08_4258
HTH-type transcriptional repressor EthR.
 
   
 0.528
RN08_4127
Cation transporter ATPase J.
  
  
 0.527
RN08_1393
Short-chain type dehydrogenase/reductase.
 
 
 0.506
RN08_1559
Monooxygenase.
  
     0.458
RN08_3819
30S ribosomal protein S4.
   
  0.423
RN08_0994
Monooxygenase.
  
     0.404
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.