Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKC37797.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)    
Predicted Functional Partners:
AKC37798.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.643
AKC38343.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.557
AKC41011.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.527
AKC39030.1
Protein YcaR in KDO2-Lipid A biosynthesis cluster; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.501
AKC40825.1
Diacylglycerol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.498
AKC40829.1
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.491
smpB
Single-stranded DNA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome t [...]
       0.469
AKC39885.1
Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.469
ftsE
Cell division protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
       0.469
AKC40216.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.451
Your Current Organism:
Mycobacteroides chelonae
NCBI taxonomy Id: 1774
Other names: ATCC 35752, CCUG 47445, CIP 104535, DSM 43804, IMET 10609, JCM 6388, M. chelonae, Mycobacterium chelonae, Mycobacterium chelonei, NCTC 946, strain CM 6388
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