SCW96247.1 protein (Ancylobacter rudongensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SCW96247.1

Predicted branched-chain amino acid permease (azaleucine resistance). (247 aa)

Predicted Functional Partners:

SCW96243.1

0.953

SCW82174.1

0.716

SCW41874.1

0.711

SCW32727.1

0.704

SCW92201.1

0.619

SCW78648.1

0.613

SCW59872.1

0.610

SCW71534.1

0.565

SCW85003.1

0.561

SCW69572.1

0.560

Your Current Organism:

Ancylobacter rudongensis

NCBI taxonomy Id: 177413
Other names: A. rudongensis, Ancylobacter rudongensis Xin et al. 2004, JCM 11671

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCW32727.1	SCW41874.1	SAMN05660859_0614	SAMN05660859_1092	Hypothetical protein.	Glyoxalase-like domain-containing protein.	0.570
SCW32727.1	SCW69572.1	SAMN05660859_0614	SAMN05660859_2285	Hypothetical protein.	Porin subfamily protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.595
SCW32727.1	SCW71534.1	SAMN05660859_0614	SAMN05660859_2420	Hypothetical protein.	Hypothetical protein.	0.767
SCW32727.1	SCW78648.1	SAMN05660859_0614	SAMN05660859_2801	Hypothetical protein.	Phasin.	0.712
SCW32727.1	SCW82174.1	SAMN05660859_0614	SAMN05660859_3087	Hypothetical protein.	Protein of unknown function.	0.751
SCW32727.1	SCW85003.1	SAMN05660859_0614	SAMN05660859_3162	Hypothetical protein.	Uncharacterized protein involved in outer membrane biogenesis.	0.751
SCW32727.1	SCW92201.1	SAMN05660859_0614	SAMN05660859_3805	Hypothetical protein.	Periplasmic chaperone for outer membrane proteins SurA.	0.766
SCW32727.1	SCW96243.1	SAMN05660859_0614	SAMN05660859_0206	Hypothetical protein.	Branched-chain amino acid transport protein (AzlD).	0.696
SCW32727.1	SCW96247.1	SAMN05660859_0614	SAMN05660859_0207	Hypothetical protein.	Predicted branched-chain amino acid permease (azaleucine resistance).	0.704
SCW41874.1	SCW32727.1	SAMN05660859_1092	SAMN05660859_0614	Glyoxalase-like domain-containing protein.	Hypothetical protein.	0.570
SCW41874.1	SCW69572.1	SAMN05660859_1092	SAMN05660859_2285	Glyoxalase-like domain-containing protein.	Porin subfamily protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.700
SCW41874.1	SCW78648.1	SAMN05660859_1092	SAMN05660859_2801	Glyoxalase-like domain-containing protein.	Phasin.	0.769
SCW41874.1	SCW82174.1	SAMN05660859_1092	SAMN05660859_3087	Glyoxalase-like domain-containing protein.	Protein of unknown function.	0.524
SCW41874.1	SCW85003.1	SAMN05660859_1092	SAMN05660859_3162	Glyoxalase-like domain-containing protein.	Uncharacterized protein involved in outer membrane biogenesis.	0.569
SCW41874.1	SCW92201.1	SAMN05660859_1092	SAMN05660859_3805	Glyoxalase-like domain-containing protein.	Periplasmic chaperone for outer membrane proteins SurA.	0.680
SCW41874.1	SCW96243.1	SAMN05660859_1092	SAMN05660859_0206	Glyoxalase-like domain-containing protein.	Branched-chain amino acid transport protein (AzlD).	0.726
SCW41874.1	SCW96247.1	SAMN05660859_1092	SAMN05660859_0207	Glyoxalase-like domain-containing protein.	Predicted branched-chain amino acid permease (azaleucine resistance).	0.711
SCW59872.1	SCW92201.1	SAMN05660859_1905	SAMN05660859_3805	Na+/proline symporter.	Periplasmic chaperone for outer membrane proteins SurA.	0.407
SCW59872.1	SCW96243.1	SAMN05660859_1905	SAMN05660859_0206	Na+/proline symporter.	Branched-chain amino acid transport protein (AzlD).	0.609
SCW59872.1	SCW96247.1	SAMN05660859_1905	SAMN05660859_0207	Na+/proline symporter.	Predicted branched-chain amino acid permease (azaleucine resistance).	0.610