STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW31650.1TRAP transporter, DctM subunit. (439 aa)    
Predicted Functional Partners:
SCW31690.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  0.995
SCW31669.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.993
SCW55147.1
Tripartite ATP-independent transporter solute receptor, DctP family.
    0.951
SCW77712.1
Tripartite ATP-independent transporter solute receptor, DctP family.
    0.907
SCW67526.1
Tripartite ATP-independent transporter solute receptor, DctP family.
    0.900
SCW67541.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 0.876
SCW55158.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.858
SCW93801.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
   
 0.812
SCW93834.1
Amino acid adenylation domain-containing protein.
    
 0.789
SCW55469.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
    0.558
Your Current Organism:
Ancylobacter rudongensis
NCBI taxonomy Id: 177413
Other names: A. rudongensis, Ancylobacter rudongensis Xin et al. 2004, JCM 11671
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