STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW33518.1Putative regulatory protein, FmdB family. (118 aa)    
Predicted Functional Partners:
SCW33536.1
Formamidase.
 
     0.873
SCW33597.1
Amino acid/amide ABC transporter membrane protein 2, HAAT family (TC 3.A.1.4.-); Belongs to the binding-protein-dependent transport system permease family.
 
     0.845
SCW33557.1
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-).
 
     0.844
SCW33574.1
Urea transport system ATP-binding protein.
 
     0.837
SCW33612.1
Urea transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.831
SCW33634.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-).
 
     0.808
SCW33653.1
Signal transduction histidine kinase.
 
    0.787
SCW43525.1
Signal transduction histidine kinase.
 
     0.777
SCW43478.1
Formamidase.
 
     0.759
SCW33669.1
Two component transcriptional regulator, LuxR family.
  
     0.758
Your Current Organism:
Ancylobacter rudongensis
NCBI taxonomy Id: 177413
Other names: A. rudongensis, Ancylobacter rudongensis Xin et al. 2004, JCM 11671
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