STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW35880.1Murein endopeptidase. Metallo peptidase. MEROPS family M74. (298 aa)    
Predicted Functional Partners:
SCW35860.1
L,D-transpeptidase catalytic domain.
 
     0.810
SCW85064.1
Uncharacterized conserved protein YcbK, DUF882 family.
  
     0.708
SCW36598.1
Hypothetical protein.
  
     0.692
SCW36583.1
Putative membrane protein.
  
     0.648
SCW35291.1
Ribosomal protein L3 glutamine methyltransferase; Belongs to the protein N5-glutamine methyltransferase family.
      0.612
SCW58338.1
Lipoprotein-anchoring transpeptidase ErfK/SrfK.
  
     0.550
SCW96649.1
Lipoprotein-anchoring transpeptidase ErfK/SrfK.
  
     0.540
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
 
  
 0.540
SCW31456.1
L,D-transpeptidase catalytic domain.
  
     0.527
SCW72040.1
Lipoprotein-anchoring transpeptidase ErfK/SrfK.
  
     0.526
Your Current Organism:
Ancylobacter rudongensis
NCBI taxonomy Id: 177413
Other names: A. rudongensis, Ancylobacter rudongensis Xin et al. 2004, JCM 11671
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