STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCW38744.1Cholesterol transport system auxiliary component. (221 aa)    
Predicted Functional Partners:
SCW38724.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
  0.981
SCW38703.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
 
  0.965
SCW38679.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 
 
 0.957
SCW94665.1
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.618
SCW94687.1
Flagellar FliL protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.618
SCW36642.1
Outer membrane scaffolding protein for murein synthesis, MipA/OmpV family.
  
     0.562
SCW96204.1
Predicted arabinose efflux permease, MFS family.
  
     0.550
SCW38658.1
L-alanine-DL-glutamate epimerase.
       0.448
SCW69572.1
Porin subfamily protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.434
SCW92215.1
Porin subfamily protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.423
Your Current Organism:
Ancylobacter rudongensis
NCBI taxonomy Id: 177413
Other names: A. rudongensis, Ancylobacter rudongensis Xin et al. 2004, JCM 11671
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